COVID-19

As Zentralinstitut for Scientific Computing, we provide a platform to promote your COVID-19 modelling and simulation activities and to get in contact with other researchers in the same field. If you want to contribute feel free to write a short excerpt of your efforts and send it to us (zisc@fau.de). Education and outreach is beside research of course of great importance and this is why we want to collect efforts related to scientific computing in all these areas.

Education

E02) Lecture “Algorithmik kontinuierlicher Systeme” on Pandemic Models and Simulation (German; 2021)

Ulrich Rüde

E01) Lecture “Algorithmik kontinuierlicher Systeme” on Pandemic models and Simulation (German)

Ulrich Rüde

Research

	R10) SARS-CoV-2 Spike Protein: Molecular Dynamics Simulations of Sequence Variants Compared to the Wild Type Protein Eileen Socher, Marcus Conrad, Lukas Heger, Friedrich Paulsen, Heinrich Sticht, Friederike Zunke, Philipp Arnold
	R09) Seminar Talk: Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution Martin Kühn (DLR)
	R08) CFD simulations on the exposition of physicians to airborne pathogens during standard airway assessment Michael Döllinger, Sarina Müller
	R07) Analytical Mechanics Allows Novel Vistas on Mathematical Epidemic Dynamics Modelling Paul Steinmann
	R06) Two simulation models for COVID-19 epidemic dynamics and some related aspects Reinhard German, Anatoli Djanatliev, Lisa Maile, Peter Bazan, Holger Hackstein
	R05) Ambulance Logistics under Covid-19 Requirements Frauke Liers
	R04) Simulations of the spread of Covid-19 for different travel scenarios Michael Schmiedeberg
	R03) COVID-19 modelling with spatial resolution Silvia Budday, Christian Burkhardt, Andreas Kergassner, Paul Steinmann
	R02) Modeling infectious diseases using integro-differential equations: Optimal control strategies for policy decisions and Applications in COVID-19 Alexander Keimer, Lukas Pflug
	R01) Data-driven COVID-19 modeling Cyprien Neverov, Enrique Zuazua

Papers and Preprints

	P11) Decomposition of the SARS-CoV-2-ACE2 interface reveals a common trend among emerging viral variants Eileen Socher, Marcus Conrad, Lukas Heger, Friedrich Paulsen, Heinrich Sticht, Friederike Zunke, Philipp Arnold Link to Preprint: bioRXiv
	P10) SARS-CoV-2 Spike Protein: Molecular Dynamics Simulations of Sequence Variants Compared to the Wild Type Protein Eileen Socher, Marcus Conrad, Lukas Heger, Friedrich Paulsen, Heinrich Sticht, Friederike Zunke, Philipp Arnold Link to Paper: Biomedicine
	P09) Memory-based meso-scale modeling of Covid-19 Andreas Kergaßner, Christian Burkhardt, Dorothee Lippold, Matthias Kergaßner, Lukas Pflug, Dominik Budday, Paul Steinmann, Silvia Budday Link to Paper: Computational mechanics
	P08) Design of COVID-19 Staged Alert Systems to Ensure Healthcare Capacity with Minimal Closures Haoxiang Yang, Özge Sürer, Daniel Duque, David P. Morton, Bismark Singh, Spencer J. Fox, Remy Pasco, Kelly Pierce, Paul Rathouz, Zhanwei Du, Michael Pignone, Mark E. Escott, Stephen I. Adler, S. Claiborne Johnston, Lauren Ancel Meyers Link to Preprint: medRxiv
	P07) International comparisons of COVID-19 deaths in the presence of comorbidities require uniform mortality coding guidelines Bismark Singh Link to Paper: IntJEpidem
	P06) Selecting pharmacies for COVID-19 testing to ensure access Simon Risanger, Bismark Singh, David Morton, Lauren Ancel Meyers Link to Preprint: medRxiv
	P05) Expanding Access to COVID-19 Tests through US Postal Service Facilities Bismark Singh, Simon Risanger, David Morton, Michael Pignone, Lauren Ancel Meyers Link to Paper: SAGE
	P04) Timing social distancing to avert unmanageable COVID-19 hospital surges Daniel Duque, David Paul Morton, Bismark Singh, Zhanwei Du, Remy Pasco, Lauren Ancel Meyers Link to Paper: PNAS
	P03) Modeling Exit Strategies from COVID-19 Lockdown with a Focus on Antibody Tests Paul Steinmann Link to Preprint: arXiv
	P02) Modeling Exit Strategies from COVID-19 Lockdown with a Focus on Antibody Tests Reinhard German, Anatoli Djanatliev, Lisa Maile, Peter Bazan, Holger Hackstein Link to Preprint: medRXiv
	P01) Modeling infectious diseases using integro-differential equations: Optimal control strategies for policy decisions and Applications in COVID-19 Alexander Keimer, Lukas Pflug Link to Preprint: ResearchGate

COVID-19

Education

E02) Lecture “Algorithmik kontinuierlicher Systeme” on Pandemic Models and Simulation (German; 2021)

E01) Lecture “Algorithmik kontinuierlicher Systeme” on Pandemic models and Simulation (German)

Research

R10) SARS-CoV-2 Spike Protein: Molecular Dynamics Simulations of Sequence Variants Compared to the Wild Type Protein

R09) Seminar Talk: Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution

R08) CFD simulations on the exposition of physicians to airborne pathogens during standard airway assessment

R07) Analytical Mechanics Allows Novel Vistas on Mathematical Epidemic Dynamics Modelling

R06) Two simulation models for COVID-19 epidemic dynamics and some related aspects

R05) Ambulance Logistics under Covid-19 Requirements

R04) Simulations of the spread of Covid-19 for different travel scenarios

R03) COVID-19 modelling with spatial resolution

R02) Modeling infectious diseases using integro-differential equations: Optimal control strategies for policy decisions and Applications in COVID-19

R01) Data-driven COVID-19 modeling

Papers and Preprints

P11) Decomposition of the SARS-CoV-2-ACE2 interface reveals a common trend among emerging viral variants

P10) SARS-CoV-2 Spike Protein: Molecular Dynamics Simulations of Sequence Variants Compared to the Wild Type Protein

P09) Memory-based meso-scale modeling of Covid-19

P08) Design of COVID-19 Staged Alert Systems to Ensure Healthcare Capacity with Minimal Closures

P07) International comparisons of COVID-19 deaths in the presence of comorbidities require uniform mortality coding guidelines

P06) Selecting pharmacies for COVID-19 testing to ensure access

P05) Expanding Access to COVID-19 Tests through US Postal Service Facilities

P04) Timing social distancing to avert unmanageable COVID-19 hospital surges

P03) Modeling Exit Strategies from COVID-19 Lockdown with a Focus on Antibody Tests

P02) Modeling Exit Strategies from COVID-19 Lockdown with a Focus on Antibody Tests

P01) Modeling infectious diseases using integro-differential equations: Optimal control strategies for policy decisions and Applications in COVID-19